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Category: Software

Description: A Python script that performs pre-submission validation of supra-schematic data constraints and automatically builds all controlled-vocabulary term usage tables required for complete C2M2 submissions. Complete ontology reference files are also included: these are used by this script to add display and discovery information (names, descriptions, synonyms) to the CV term tables it creates. NOTE: HPO phenotype code processing is under construction and is currently offline with respect to this script; a stub phenotype TSV will be generated for basic format compliance, but non-null phenotype code values in data tables will be ignored and may cause submission errors.


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