CFDE Public Files

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Category: Project

Description: Project will include all the data files associated with CFDE tutorials

Files

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Components

  • MIME type tutorial

    Example files for MIME type tutorial on CFDE training website

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  • GWAS tutorial


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  • Example C2M2 submission datasets

    Examples of different configurations of valid C2M2 submissions, based on real submission metadata.

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  • RNAseq on Cavatica

    Supporting documents for the RNAseq on Cavatica lesson

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  • C2M2 term-table builder script + ontology support files

    Reference files plus a Python script to automatically build all needed controlled-vocabulary term usage tables in C2M2 submissions

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  • CFDE-defined controlled vocabularies for C2M2

    Lists of controlled terms for expressing C2M2 entity roles and relationships (right now: subject roles & granularities)

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  • C2M2 master JSON Schema

    A JSON Schema document describing the current C2M2 metadata model

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  • C2M2 development JSON schema

    Advance schema for next quarter's release: currently being tested in development

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  • DRAFTS: CFDE-defined controlled vocabularies for C2M2

    draft lists of values (and related display metadata) for C2M2 fields that are categorical variables

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