The Supplementary Data package from Sridhar et al. (2022) contains the Phyloseq objects all the count tables, taxonomic information, phylogenetic trees, and metadata for bacterial and fungal datasets. The Phyloseq objects have been saved in the 'rds' format. The package also includes files with the representative sequences of all ASVs in fasta format.
**Reference**:
Bhavya Sridhar, Roland C. Wilhelm, Spencer J. Debenport, Timothy J. Fahey, Daniel H. Buckley, and Christine L. Goodale (2022). Microbial community shifts correspond with suppression of decomposition 25 years after liming of acidic forest soils. Global Change Biology.