This web site provides code and data files that implement the simulations performed in the following paper:
> Kay, K. The risk of bias in data denoising methods: examples from neuroimaging. PLoS ONE (2022).
This paper is at https://doi.org/10.1371/journal.pone.0270895.
The code has several dependencies:
- https://github.com/cvnlab/knkutils/
- https://github.com/cvnlab/nsdcode/
- https://github.com/bastibe/Violinplot-Matlab, DOI: 10.5281/zenodo.4559847
- https://www.mathworks.com/matlabcentral/fileexchange/8797-tools-for-nifti-and-analyze-image
- https://github.com/ofgulban/segmentator
- https://www.fil.ion.ucl.ac.uk/spm/
- https://fsl.fmrib.ox.ac.uk/fsl/
The scripts Figure*.m run the simulations reported in the paper. The other files are functions and data files used by these scripts.