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<p>Overview of material associated with manuscript </p> <p><em>J. van Arensbergen et al:</em> </p> <p><strong>Systematic identification of human SNPs affecting regulatory element activity.</strong></p> <ul> <li>Publication in <a href="https://www.nature.com/articles/s41588-019-0455-2" rel="nofollow">Nature Genetics</a></li> <li><a href="https://doi.org/10.1101/460402" rel="nofollow">Early version of the manuscript in bioRxiv</a> (see the <a href="https://osf.io/w5bzq/wiki/home/?view" rel="nofollow">'live' project page</a> on OSF for a link to the published manuscript)</li> <li><a href="https://github.com/vansteensellab/SuRE-SNV-code/tree/62ca98d7dfa6caecb3af868c078129cfa75b46db" rel="nofollow">github repos with scripts and pipeline</a></li> <li>data files: </li> <li><a href="https://osf.io/h3m49/" rel="nofollow">SuRE-count tables</a></li> <li><a href="https://osf.io/pjxm4/" rel="nofollow">Annotated SNPs</a></li> <li><a href="https://osf.io/m3ve8/" rel="nofollow">genome-wide SuRE-signal profiles</a></li> <li><a href="https://osf.io/6y9td/" rel="nofollow">lists of raQTLs (and matched controls)</a></li> <li><a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE128325" rel="nofollow">link to raw data in GEO</a></li> <li>Online <a href="https://sure.nki.nl" rel="nofollow">SNP-SuRE data browser</a></li> <li><a href="https://osf.io/w5bzq/wiki/External%20data%20sources/" rel="nofollow">Table of external data sources</a></li> </ul> <p>This OSF project page has a <a href="https://osf.io/mqdk4" rel="nofollow">registration</a> which reflects the state of data and code at the time the manuscript was submitted for publication.</p>
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