This repository hosts all input files, source code, and output files accompanying the paper: **"Preserved functional organization of auditory cortex in two individuals missing one temporal lobe from infancy"**.
The data and subfigures required to construct all figures in the paper can be found in `data/` and `figures/`. The source code to reconstruct these elements from raw inputs can be found in `src/`. In addition, the task stimuli can be found in `stims/`. A more detailed file breakdown follows below. All scripts have been tested on MATLAB 2020a-2024b.
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The directory structure is as follows:
└ **`data/`** [*all input and output data*]
└── `*.csv`, `*.xlsx` [*data corresponding with manuscript tables*]
└── `*.mat` [*input files for MATLAB*]
└ **`figures/`** [*all subfigures presented in paper*]
└── `atlas/` [*component activation atlas for NTs and boundaries for POIs*]
└── `map/` [*individual component activation maps for POIs*]
└── `*.png`, `*.pdf` [*output figures presented in manuscript*]
└ **`src/`** [*source code to run analyses and generate output tables and figures*]
└── `*.m` [*these scripts recreate the figures and tables included above*]
└── `crawford/` [*dependency for crawford test*]
└── `fdr/` [*dependency for fdr correction*]
└── `violin/` [*depdencency for violin plots*]
└ **`stims/`**
└── `naturalsound165/` [*all 165 natural sounds auditory stimuli*]
└── `naturalsound30/` [*subset of 30 natural sounds auditory stimuli used in this task*]
