The segmentations generated in the study are arranged as follows:
- Leave-one-out cross-comparisons:
- MAPER segmentations are given as nifti volumes.
- FreeSurfer segmentations are given as nifti volumes for cortical segmentations and mgz volumes (FreeSurfer format) for subcortical segmentations.
- Validation on ADNI & TLE data:
- MAPER segmentations are given as nifti volumes.
- FreeSurfer segmentations are given as left and right hemisphere FreeSurfer cortical surface annotations (lh and rh .annot files) and mgz volumes (FreeSurfer format) for subcortical segmentations.
The atlas databases used in this study are available to download from their respective websites:
- The Hammers_mith (HM) atlases: http://brain-development.org/brain-atlases/adult-brain-atlases
- The Desikan-Killiany-Tourville (DKT40) atlases: https://mindboggle.info/data.html
- The MICCAI 2012 Grand Challenge and Workshop on Multi-Atlas Labelling (MGC2012): https://my.vanderbilt.edu/masi/workshops
The software used in this study are available to download from their respective websites:
- MAPER: https://github.com/soundray/maper
- pincram: https://github.com/soundray/pincram
- FreeSurfer: http://www.freesurfer.net
The ADNI data are available for download from http://adni.loni.usc.edu.