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This wiki explains the structure of the **Data, Analysis, and Figures** component. The component contains one main folder, **r_project**. If you want to reproduce the entire analysis, I recommend you download that folder as a ZIP file, open the *r_project.Rproj* file and then select the Rmarkdown file from the analysis sub-folder. Within the project folder are the following sub-folders. ### analysis This folder contains the Rmarkdown file (*analysis_script.Rmd*) for the analysis. The files report every single step I took from raw data to final analysis. Each step also contains annotations so that readers can go through the entire process. The HTML file (*analysis_report.html*) is the rendered version of the Rmarkdown file. To follow the analysis, I recommend looking at the HTML file because it is easier to read. ### data This folder contains the data for the study. There are two sub-folders: **raw_data** and **processed_data**. **raw_data** contains three raw data files: the logging data, the intake survey, and the outtake survey. *codebook_raw_data.docx* is the codebook for those three data files and explains all variables. **processed_data** contains the cleaned and processed data files: the logging data, the intake survey, and the outtake survey. *codebook_processed_data.docx* is the codebook for those three data files and explains all variables. Because some objects in the Rscript are quite large, I also added the workspace of the analysis. ### output This folder contains all figures and tables. Note that the tables are basically extracted parameters from the mixed-model objects.
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