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Complete documentation on how to run SuperCRUNCH is available at: https://github.com/dportik/SuperCRUNCH/wiki The following generalized commands were used to run the analysis. Please note that the `/Path/To/` should be changed to the actual file locations. There are files in the SuperCRUNCH - 2 - Starting Materials section used here (https://osf.io/zrbvm/). ``` python Parse_Loci.py -i /PATH/TO/Starting-Materials/Anura-GenBank-July_2_2022-Relabeled-Outgroups.fasta -o /PATH/TO/3-Parse-Loci -l /PATH/TO/Starting-Materials/Locus-Search-Terms-Anura.txt -t /PATH/TO/Starting-Materials/Taxon-List-Anura-July_2_2022-outgroups.txt ```
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