Stage 1 Submission

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For Stage 1 Submission, we have uploaded the following: - A zip file containing pre-prepared analysis scripts and a simulated dataset. - Example annotated outputs based on simulated data (html files) The workflow and relation between the scripts is depicted in WP4_Pipeline.pdf. Following Stage 1 review, revised versions of the scripts were uploaded in Dec 2022. Given that ALSPAC data cannot be made openly available, it is annotated output files that will be shared at Stage 2, once the analyses have been conducted. We welcome feedback on how to share our outcomes in the most transparent and reproducible way.

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