Bayesian data analysis in the phonetic sciences: A tutorial introduction

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Description: This tutorial analyzes voice onset time (VOT) data from Dongbei (Northeastern) Mandarin Chinese and North American English to demonstrate how Bayesian linear mixed models can be fit using the programming language Stan via the R package brms. Through this case study, we demonstrate some of the advantages of the Bayesian framework: researchers can (i) flexibly define the underlying process that they believe to have generated the data; (ii) obtain direct information regarding the uncertainty about the parameter that relates the data to the theoretical question being studied; and (iii) incorporate prior knowledge into the analysis. Getting started with Bayesian modeling can be challenging, especially when one is trying to model one’s own (often unique) data. It is difficult to see how one can apply general principles described in textbooks to one’s own specific research problem. We address this barrier to using Bayesian methods by providing three detailed examples, with source code to allow easy reproducibility. The examples presented are intended to give the reader a flavor of the process of model-fitting; suggestions for further study are also provided. All data and code are available from this website.

License: MIT License

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This is an online supplement to the following paper, which has been accepted for publication in the Journal of Phonetics: Shravan Vasishth, Bruno Nicenboim, Mary E. Beckman, Fangfang Li, and Eun Jong Kong. Bayesian data analysis in the phonetic sciences: A tutorial introduction. Journal of Phonetics, 2018. The online Rmd file contains a sketch of the essential code chunks that are discussed in the...

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