@[toc](Table of Contents) # 1. LIST OF FILES IN ARCHIVE ## A. Published Manuscript * *KayeJ2016a.pdf* : Published manuscript. * *KayeJ2016a_Supplement.pdf* : Published supplemental materials. <br> *** <br> ## B. Analyses Scripts ### B1. Make Data Files * *mak_AllTasks.R* : R script to create a data file (Kaye1_Psychophysiology_AllData.dat) that contains all the physiology variables used in reported analyses. * *mak_Scales.R* : R script to create a data file (Kaye1_Psychophysiology_Scales.dat) that contains the self-report variables reported in supplemental materials. <br> *** <br> ### B2. No Shock, Predictable Shock, Unpredictable Shock (NPU) Task **NPU Task: Main Analysis Files** * *ana_NPU_CRG_Frequency.R* : R script to produce all reported analyses for NPU Task corrugator potentiation in the frequency domain. * *ana_NPU_CRG_Time.R* : R script to produce all reported analyses for NPU Task corrugator potentiation in the time domain. * *ana_NPU_STL_Raw.R* : R script to produce all reported analyses for NPU Task raw startle potentiation. * *ana_NPU_STL_Tscore.R* : R script to produce all reported analyses for NPU Task standardized (t-score) startle potentiation. * *cas_NPU_CRG_Frequency.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_NPU_CRG_Frequency.R * *cas_NPU_CRG_Time.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_NPU_CRG_Time.R * *cas_NPU_STL_Raw.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_NPU_STL_Raw.R * *cas_NPU_STL_Tscore.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_NPU_STL_Tscore.R <br> **NPU Task: Supplemental Analysis Files** * *sup_NPU_CRG_Frequency_Cond.R* : R script to produce all reported supplemental analyses for NPU Task by condition for corrugator response in the frequency domain. * *sup_NPU_CRG_Time_Cond.R* : R script to produce all reported supplemental analyses for NPU Task by condition for corrugator response in the time domain. * *sup_NPU_STL_Raw_Cond.R* : R script to produce all reported supplemental analyses for NPU Task by condition for raw startle response. * *sup_NPU_STL_Tscore_Cond.R* : R script to produce all reported supplemental analyses for NPU Task by condition for standardized (t-score) startle response. * *sup_NPU_PEQ.R* : R script to produce descriptive statistics of the Post-NPU Task subjective self-report measures (aka post-experiment questionnaire, PEQ) * *cas_sup_NPU_CRG_Frequency_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_NPU_CRG_Frequency_Cond.R * *cas_sup_NPU_CRG_Time_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_NPU_CRG_Time_Cond.R * *cas_sup_NPU_STL_Raw_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_NPU_STL_Raw_Cond.R * *cas_sup_NPU_STL_Tscore_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_NPU_STL_Tscore_Cond.R <br> *** <br> ### B3. Affective Picture Viewing Task (aka IAPS) **IAPS Task: Main Analysis Files** * *ana_IAPS_CRG_Frequency.R* : R script to produce all reported analyses for Affective Picture Viewing (IAPS) Task corrugator modulation in the frequency domain. * *ana_IAPS_CRG_Time.R* : R script to produce all reported analyses for Affective Picture Viewing (IAPS) Task corrugator modulation in the time domain. * *ana_IAPS_STL_Raw.R* : R script to produce all reported analyses for Affective Picture Viewing (IAPS) Task raw startle modulation. * *ana_IAPS_STL_Tscore.R* : R script to produce all reported analyses for Affective Picture Viewing (IAPS) Task standardized (t-score) startle modulation. * *cas_IAPS_CRG_Frequency.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_IAPS_CRG_Frequency.R * *cas_IAPS_CRG_Time.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_IAPS_CRG_Time.R * *cas_IAPS_STL_Raw.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_IAPS_STL_Raw.R * *cas_IAPS_STL_Tscore.R* : R script to produce case analysis of models to identify model outliers to be removed from analyses in ana_IAPS_STL_Tscore.R <br> **IAPS Task: Supplemental Analysis Files** * *sup_IAPS_CRG_Frequency_Cond.R* : R script to produce all reported supplemental analyses for Affective Picture Viewing (IAPS) Task by condition for corrugator response in the frequency domain. * *sup_IAPS_CRG_Time_Cond.R* : R script to produce all reported supplemental analyses for Affective Picture Viewing (IAPS) Task by condition for corrugator response in the time domain. * *sup_IAPS_STL_Raw_Cond.R* : R script to produce all reported supplemental analyses for Affective Picture Viewing (IAPS) Task by condition for raw startle response. * *sup_IAPS_STL_Tscore_Cond.R* : R script to produce all reported supplemental analyses for Affective Picture Viewing (IAPS) Task by condition for standardized (t-score) startle response. * *sup_IAPS_SAM.R* : R script to produce descriptive statistics of the study sample self-report of Affective Picture Viewing (IAPS) picture Self-Assessment Manikin (SAM). * *cas_sup_IAPS_CRG_Frequency_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_IAPS_CRG_Frequency_Cond.R * *cas_sup_IAPS_CRG_Time_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_IAPS_CRG_Time_Cond.R * *cas_sup_IAPS_STL_Raw_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_IAPS_STL_Raw_Cond.R * *cas_sup_IAPS_STL_Tscore_Cond.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_IAPS_STL_Tscore_Cond.R <br> *** <br> ### B4. Resting State Task **Resting State Task: Main Analysis Files** * *ana_RestingState_STL_Raw.R* : R script to produce all reported analyses for Resting State Task raw startle response (general startle reactivity). * *cas_RestingState_STL_Raw.R* : R script to produce case analysis of models to identify model outliers to be removed from supplemental analyses in sup_RestingState_STL_Raw_Cond.R <br> *** <br> ### B5. Other Supplemental Analysis * *sup_TableS8_STL_NumTrials.R* : R script to produce supplemental table S8, number of valid trials analyzed for startle response across study visits, task condition and quantification method. * *sup_TableS9_CRG_NumTrials.R* : R script to produce supplemental table S9, number of valid trials analyzed for corrugator response across study visits, task condition and quantification method. <br> *** <br> ## C. Data ### C1. Raw Data **Raw Startle Data (Trial-level)** These files are used by mak_AllTasks.R to create startle DVs in Kaye1_Psychophysiology_AllData.dat * *Base_D1_T1_STL_Trial_20_100.dat* : Tab delimited data file from Resting State Task on Study Visit 1 (Time 1, pre-task) that contains raw trial-level data for the startle response. * *Base_D2_T1_STL_Trial_20_100.dat* : Tab delimited data file from Resting State Task on Study Visit 2 (Time 1, pre-task) that contains raw trial-level data for the startle response. * *Base_D2_T2_STL_Trial_20_100.dat* : Tab delimited data file from Resting State Task on Study Visit 2 (Time 2, post-task) that contains raw trial-level data for the startle response. * *IAPS1_STL_Trial_20_100.dat* : Tab delimited data file from Affective Picture Viewing State Task on Study Visit 1 that contains raw trial-level data for the startle response. * *IAPS2_STL_Trial_20_100.dat* : Tab delimited data file from Affective Picture Viewing State Task on Study Visit 2 that contains raw trial-level data for the startle response. * *NPU1_STL_Trial_20_100.dat* : Tab delimited data file from NPU Task on Study Visit 1 that contains raw trial-level data for the startle response. * *NPU2_STL_Trial_20_100.dat* : Tab delimited data file from NPU Task on Study Visit 2 that contains raw trial-level data for the startle response. <br> **Raw Corrugator Data: Time Domain (Grand Average by Condition)** These files are used by mak_AllTasks.R to create corrugator DVs in the time domain in Kaye1_Psychophysiology_AllData.dat * *IAPS1_CRG_Time_1000to3000_MAX500.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 1 that contains average condition-level data for the corrugator response in the time domain. * *IAPS1_CRG_Time_Even_1000to3000_MAX500.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 1 that contains average condition-level data from even-trials only for the corrugator response in the time domain. * *IAPS1_CRG_Time_Odd_1000to3000_MAX500.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 1 that contains average condition-level data from odd-trials only for the corrugator response in the time domain. * *IAPS2_CRG_Time_1000to3000_MAX500.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 2 that contains average condition-level data for the corrugator response in the time domain. * *IAPS2_CRG_Time_Even_1000to3000_MAX500.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 2 that contains average condition-level data from even-trials only for the corrugator response in the time domain. * *IAPS2_CRG_Time_Odd_1000to3000_MAX500.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 2 that contains average condition-level data from odd-trials only for the corrugator response in the time domain. * *NPU1_CRG_Time_1000to4500_MAX500.dat* : Tab delimited data file from NPU Task on Study Visit 1 that contains average condition-level data for the corrugator response in the time domain. * *NPU1_CRG_Time_Even_1000to4500_MAX500.dat* : Tab delimited data file from NPU Task on Study Visit 1 that contains average condition-level data from even-trials only for the corrugator response in the time domain. * *NPU1_CRG_Time_Odd_1000to4500_MAX500.dat* : Tab delimited data file from NPU Task on Study Visit 1 that contains average condition-level data from odd-trials only for the corrugator response in the time domain. * *NPU2_CRG_Time_1000to4500_MAX500.dat* : Tab delimited data file from NPU Task on Study Visit 2 that contains average condition-level data for the corrugator response in the time domain. * *NPU2_CRG_Time_Even_1000to4500_MAX500.dat* : Tab delimited data file from NPU Task on Study Visit 2 that contains average condition-level data from even-trials only for the corrugator response in the time domain. * *NPU2_CRG_Time_Odd_1000to4500_MAX500.dat* : Tab delimited data file from NPU Task on Study Visit 2 that contains average condition-level data from odd-trials only for the corrugator response in the time domain. <br> **Raw Corrugator Data: Frequency Domain (Trial-level)** These files are used by mak_AllTasks.R to create corrugator DVs in the Frequency domain in Kaye1_Psychophysiology_AllData.dat * *NPU1_CRG_Freq_FFTTrial.dat* : Tab delimited data file from NPU Task on Study Visit 1 that contains raw trial-level Power data for the corrugator response in the Frequency domain. Two rows per trial (1s pre-cue baseline & 4.5s post-cue) and one column per 1Hz frequency band. * *NPU2_CRG_Freq_FFTTrial.dat* : Tab delimited data file from NPU Task on Study Visit 2 that contains raw trial-level Power data for the corrugator response in the Frequency domain. Two rows per trial (1s pre-cue baseline & 4.5s post-cue) and one column per 1Hz frequency band. * *IAPS1_CRG_Freq_FFTTrial.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 1 that contains raw trial-level Power data for the corrugator response in the Frequency domain. Two rows per trial (1s pre-cue baseline & 4.5s post-cue) and one column per 1Hz frequency band. * *IAPS2_CRG_Freq_FFTTrial.dat* : Tab delimited data file from Affective Picture Viewing Task on Study Visit 2 that contains raw trial-level Power data for the corrugator response in the Frequency domain. Two rows per trial (1s pre-cue baseline & 4.5s post-cue) and one column per 1Hz frequency band. <br> *** <br> ### C2. Aggregate Data * *Kaye1_Psychophysiology_AllData.dat* : Tab delimited file that contains all processed physiology data from both measures and quantification approaches (startle: raw & standardized; corrugator: time and frequency domain) in all three tasks. * *Kaye1_Psychophysiology_Scales.dat* : Tab delimited file that contains all self-report questionnaire data reported in supplemental analysis. <br> *** <br> ## D. Data Processing **Corrugator Time Domain - Parameter Files** * *Kaye1_NPU1_CRGParameters_Time.dat* : Tab-delimited file with input parameters for offline data processing with PhysBox (EEGLab extension for Matlab pluggin) of corrugator EMG in the NPU Task, study visit 1. File also contains output descriptives of data processing outcome. Used by sup_TableS9_CRG_NumTrials.R. * *Kaye1_NPU2_CRGParameters_Time.dat* : Tab-delimited file with input parameters for offline data processing with PhysBox (EEGLab extension for Matlab pluggin) of corrugator EMG in the NPU Task, study visit 2. File also contains output descriptives of data processing outcome. Used by sup_TableS9_CRG_NumTrials.R. * *Kaye1_IAPS1_CRGParameters_Time.dat* : Tab-delimited file with input parameters for offline data processing with PhysBox (EEGLab extension for Matlab pluggin) of corrugator EMG in the IAPS Task, study visit 1. File also contains output descriptives of data processing outcome. Used by sup_TableS9_CRG_NumTrials.R. * *Kaye1_IAPS2_CRGParameters_Time.dat* : Tab-delimited file with input parameters for offline data processing with PhysBox (EEGLab extension for Matlab pluggin) of corrugator EMG in the IAPS Task, study visit 2. File also contains output descriptives of data processing outcome. Used by sup_TableS9_CRG_NumTrials.R. <br> *** <br> ## E. Questionnaires Questionnaires are not included in the CC-BY licensing of this project, and are either non-copyrighted, or copyrighted by their respective copyright holders. **Individual Difference Battery** * *Demographics* : 5 items, Kaye1_ID_Demographic.pdf * *Depression Anxiety Stress Scale (DASS)* : 21 items, Kaye1_ID_DASS21.pdf * *Anxiety Sensitivity Index - 3 (ASI3)* : 18 items, Kaye1_ID_ASI3.pdf * *Behavioral Activation and Behavioral Inhibition Scales (BAI)* : 20 items, Kaye1_ID_BAI.pdf * *Intolerance of Uncertainty Inventory (IUI) - Part A* : 15 items Kaye1_ID_IUI.pdf * *Brief Multidiemnsional Personality Questionnaire (MPQ)* : 155 items, Kaye1_ID_MPQ.pdf * *Externalizing Spectrum Inventory (ESI)* : 100 items, Kaye1_ID_ESI100.pdf <br> **Post-Task Subjective Self-report Questionnaires** * *NPU Post-Task Subjective Self-Report* : Kaye1_NPU_PEQ.pdf * *IAPS Self-Assessment Manikin - Picture Set A (SAM-A)* : Kaye1_IAPS_SAM_A.pdf * *IAPS Self-Assessment Manikin - Picture Set B (SAM-B)* : Kaye1_IAPS_SAM_B.pdf <br> *** <br> ## F. Other * *Kaye1_VariableKey.pdf* : Codebook that explains naming convention for all physiology variables in Kaye1_Psychophysiology_AllData.dat * *Kaye1_Counterbalancing_NPU.xlsx* : Microsoft Excel file with the trial structure and timing of all events in the NPU task. File contains four worksheets; each worksheet represents one version of the task counterbalanced with respect to condition and startle probe order. * *Kaye1_Counterbalancing_IAPS.xlsx* : Microsoft Excel file with the trial structure and timing of all events in the Affective Picture Viewing (IAPS) task. File contains four worksheets; each worksheet represents one version of the task counterbalanced with respect to condition and startle probe order. <br> *** <br> # 2. NOTES The questionnaires in this study were administered on the computer using Qualtrics software. However, we provide digital copies of the questionnaires here for documetation purposes. In some instances, the formatting may not exactly match the formating as displayed by Qualtrics. <br> *** <br> # 3. CONTACT REQUEST AND CITATIONS If you plan to use the data or other materials in this archive in manuscript for publication, we request that you: A. Contact the senior author (John Curtin, *jjcurtin@wisc.edu*) to inform him of your plans. B. Cite both the original manuscript from the *Psychophysiology* and this digital archive. Kaye, J. T., Bradford, D. E., & Curtin, J. J. (2016). Psychometric properties of startle and corrugator response in NPU, Affective Picture Viewing, and Resting State tasks. *Psychophysiology*, 53(8), 1241-1255. Kaye, J. T., Bradford, D. E., & Curtin, J. J. (2016, February 22). Psychometric properties of startle and corrugator response in NPU, Affective Picture Viewing, and Resting State tasks. (Data and study materials). Retrieved from osf.io/fdjg9 <br> *** <br> # 4. LICENSE INFO [![Creative Commons License][2]](http://creativecommons.org/licenses/by/4.0/) Excluding questionnaires, all components of this project, [Psychometric properties of startle and corrugator response in NPU, Affective Picture Viewing, and Resting State tasks](http://dionysus.psych.wisc.edu) by [Jesse T. Kaye, Daniel E. Bradford, and John J. Curtin](http://dionysus.psych.wisc.edu) are licensed under a [Creative Commons Attribution 4.0 International License](http://creativecommons.org/licenses/by/4.0/). <a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png" /></a><br /><span xmlns:dct="http://purl.org/dc/terms/" property="dct:title">Psychometric properties of startle and corrugator response in NPU, Affective Picture Viewing, and Resting State tasks</span> by <a xmlns:cc="http://creativecommons.org/ns#" href="http://dionysus.psych.wisc.edu/" property="cc:attributionName" rel="cc:attributionURL">Jesse T. Kaye, Daniel E. Bradford, and John J. Curtin </a> is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>. [1]: http://dionysus.psych.wisc.edu/WebCMS/self-report-detail.htm?title=Brief_form_Multidimensional_Personality_Questionnaire_%28MPS%29 "lab website" [2]: https://i.creativecommons.org/l/by/4.0/88x31.png