The code in the associated gitHub repository contains all the MATLAB software used to analyze the data and generate the figures for the following publication: Roth, ZN, Ryoo, M, and Merriam, EP (2020). Task-related activity in human visual cortex. (DOI: https://doi.org/10.1371/journal.pbio.3000921).
This code depends heavily on two other software packages: mrTools, and mgl. Additional packages used are: gru, and Circular Statistics Toolbox.
To generate the figures in the paper, download all the data into a single folder, and run the following functions. If things don’t work out, please contact Zvi Roth (zvi.roth@mail.huji.ac.il) and Eli Merriam (elisha.merriam@nih.gov).
Order in which to run scripts:
(retrieve data)
savePupilData.m
saveTaskEyeData.m
saveTaskData.m
saveTaskData_localizer.m
saveTaskDataPhysio.m
saveControlData.m
(generate figures)
fig2.m
fig3.m
fig4.m
fig5.m
fig6.m
fig7.m
figS1B.m
figS2.m
figS3.m
(statistical significance of results)
permutationTest.m
permutationTest_pupil.m
permutationTest_pulse.m
