Complete documentation on how to run SuperCRUNCH is available at: https://github.com/dportik/SuperCRUNCH/wiki
The following generalized commands were used to run the analysis. Please note that the `/Path/To/` should be changed to the actual file locations.
This analysis is a simple and efficient way to create a table of GenBank accession numbers, for all species and markers. To use this script, the labels in the fasta files should be in the GenBank style (it's okay if the taxa were modified by SuperCRUNCH). It cannot process files already relabeled with genus_species names.
```
python Make_Acc_Table.py -i /Path/To/10-Make-Acc-Table/input -o /Path/To/10-Make-Acc-Table/output
```
The output on screen looked like this:
```
Found 113 files to use for accession table.
Found 5,324 unique taxon labels across fasta files.
Gathering accession numbers for all taxa.
Writing accession table.
Writing taxon summary file.
```
