Downsampled CHiCAGO Rds

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Please note that for some functions the Rds files need to be edited to show the full paths to the Design files: *rmapfile*, *baitmapfile*, *nperbinfile*, *nbaitsperbinfile* and *proxOEfile*. The rmap and baitmap used to generate the full set of Design files are available in this OSF repository (see Design files: HindIII GWAS all common chrs). For example, in R: cd_hacat@settings$rmapfile <- "user/chicago/designDir/GRCh37_HindIII_sharedChr.rmap" Rds files were either generated in CHiCAGO for individual replicates or for combined replicates (i.e. both chinput files provided in the same CHiCAGO command). DS = "Downsample"; M = "million reads". Filenames with "reps" refers to both replicates run through CHiCAGO together. All samples were processed using the HindIII GWAS baitmap that had been restricted to all common chromosomes between the two different baitmaps for HaCaT and MyLa.

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