Four main tree files for easy access:
1. ASTRAL_SeqCap_SpeciesTree_LocalPosteriorProbabilities.tre comes from the typical ASTRAL analysis (described [here][1]), and was generated from the RAxML gene trees of the sequence capture loci.
2. ASTRAL_SeqCap_SpeciesTree_MultilocusBootstrapScores.tre comes from the boostrapped ASTRAL analysis (described [here][2]), and was generated from the RAxML boostrapped gene trees of the sequence capture loci.
3. BEAST_Afrobatrachia_Constrained_Consensus_Tree.tre comes from the BEAST divergence dating analysis using a fixed tree topology (described [here][3]), and is the resulting consensus tree. It is ultrametric and can be used with phylogenetic comparative methods (trait and diversification rate analyses).
4. RAxML_Afrobatrachia_Constrained_Best_Tree.tre comes from the species tree constrained RAxML analysis of the GenBank supermatrix (described [here][4]). It is not ultrametric and has no support values.
[1]: https://osf.io/295qp/wiki/home/
[2]: https://osf.io/295qp/wiki/home/
[3]: https://osf.io/7y59t/wiki/home/
[4]: https://osf.io/vhup5/wiki/home/