Main content

Home

Menu

Loading wiki pages...

View
Wiki Version:
Four main tree files for easy access: 1. ASTRAL_SeqCap_SpeciesTree_LocalPosteriorProbabilities.tre comes from the typical ASTRAL analysis (described [here][1]), and was generated from the RAxML gene trees of the sequence capture loci. 2. ASTRAL_SeqCap_SpeciesTree_MultilocusBootstrapScores.tre comes from the boostrapped ASTRAL analysis (described [here][2]), and was generated from the RAxML boostrapped gene trees of the sequence capture loci. 3. BEAST_Afrobatrachia_Constrained_Consensus_Tree.tre comes from the BEAST divergence dating analysis using a fixed tree topology (described [here][3]), and is the resulting consensus tree. It is ultrametric and can be used with phylogenetic comparative methods (trait and diversification rate analyses). 4. RAxML_Afrobatrachia_Constrained_Best_Tree.tre comes from the species tree constrained RAxML analysis of the GenBank supermatrix (described [here][4]). It is not ultrametric and has no support values. [1]: https://osf.io/295qp/wiki/home/ [2]: https://osf.io/295qp/wiki/home/ [3]: https://osf.io/7y59t/wiki/home/ [4]: https://osf.io/vhup5/wiki/home/
OSF does not support the use of Internet Explorer. For optimal performance, please switch to another browser.
Accept
This website relies on cookies to help provide a better user experience. By clicking Accept or continuing to use the site, you agree. For more information, see our Privacy Policy and information on cookie use.
Accept
×

Start managing your projects on the OSF today.

Free and easy to use, the Open Science Framework supports the entire research lifecycle: planning, execution, reporting, archiving, and discovery.