Complete documentation on how to run SuperCRUNCH is available at: https://github.com/dportik/SuperCRUNCH/wiki
The following generalized commands were used to run the analysis. Please note that the `/Path/To/` should be changed to the actual file locations.
This analysis relabeled the sequences with genus_species names, thereby replacing the GenBank style labels.
```
python Fasta_Relabel_Seqs.py -i /Path/To/11-Relabel/input -o /Path/To/11-Relabel/output -r species
```