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<p>This component performs the analysis which is reported in the manuscript. The analysis code is contained in <code>analysis_script_1.R</code>. This files requires the prepared data contained in <code>dat_final.rda</code>. </p> <p>As the computation of the mixed models and follow-up tests reported in the manuscript can be time consuming, <code>lmm_indiv.rda</code> contains those models. The analysis scripts tries to load the file, if it is not present, the computation is redone. </p> <p>The analysis script also produces the three Figures given in the paper and also contained here: <code>dv_CgivenA_concessivs.png</code>, <code>dv_CgivenA_indicatives.png</code>, and <code>random_effects.png</code>.</p> <p>The analysis given in the supplemental materials is contained in file <code>analysis_script-ADDITIONAL.R</code> which also produces the following results figures shown in the supplemental materials: <code>indiv_slopes.png</code>, <code>supp_dv_CgivenA_concessives_001.png</code> to <code>supp_dv_CgivenA_concessives_004.png</code>, and <code>supp_dv_CgivenA_indicatives_001.png</code> to <code>supp_dv_CgivenA_indicatives_004.png</code>.</p> <p>Below is the session info showing which R and package versions were used in this analysis:</p> <pre class="highlight"><code>&gt; sessionInfo() R version 3.2.1 (2015-06-18) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=German_Switzerland.1252 LC_CTYPE=German_Switzerland.1252 LC_MONETARY=German_Switzerland.1252 [4] LC_NUMERIC=C LC_TIME=German_Switzerland.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] multcomp_1.4-1 TH.data_1.0-6 survival_2.38-2 mvtnorm_1.0-3 afex_0.14-2 lsmeans_2.19 [7] estimability_1.1 reshape2_1.4.1 lme4_1.1-8 Matrix_1.2-1 psych_1.5.4 stringi_0.5-5 [13] devtools_1.8.0 loaded via a namespace (and not attached): [1] Rcpp_0.12.0 nloptr_1.0.4 git2r_0.10.1 plyr_1.8.3 tools_3.2.1 digest_0.6.8 [7] memoise_0.2.1 nlme_3.1-121 lattice_0.20-31 mgcv_1.8-6 rstudioapi_0.3.1 curl_0.9 [13] parallel_3.2.1 SparseM_1.6 coin_1.1-0 coda_0.17-1 stringr_1.0.0 xml2_0.1.1 [19] rversions_1.0.1 stats4_3.2.1 grid_3.2.1 nnet_7.3-10 minqa_1.2.4 car_2.0-26 [25] magrittr_1.5 modeltools_0.2-21 codetools_0.2-11 fortunes_1.5-2 MASS_7.3-41 splines_3.2.1 [31] pbkrtest_0.4-2 mnormt_1.5-3 quantreg_5.11 sandwich_2.3-3 zoo_1.7-12</code></pre>
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