This component performs the analysis which is reported in the manuscript. The analysis code is contained in `analysis_script_1.R`. This files requires the prepared data contained in `dat_final.rda`.
As the computation of the mixed models and follow-up tests reported in the manuscript can be time consuming, `lmm_indiv.rda` contains those models. The analysis scripts tries to load the file, if it is not present, the computation is redone.
The analysis script also produces the three Figures given in the paper and also contained here: `dv_CgivenA_concessivs.png`, `dv_CgivenA_indicatives.png`, and `random_effects.png`.
The analysis given in the supplemental materials is contained in file `analysis_script-ADDITIONAL.R` which also produces the following results figures shown in the supplemental materials: `indiv_slopes.png`, `supp_dv_CgivenA_concessives_001.png` to `supp_dv_CgivenA_concessives_004.png`, and `supp_dv_CgivenA_indicatives_001.png` to `supp_dv_CgivenA_indicatives_004.png`.
Below is the session info showing which R and package versions were used in this analysis:
> sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=German_Switzerland.1252 LC_CTYPE=German_Switzerland.1252 LC_MONETARY=German_Switzerland.1252
[4] LC_NUMERIC=C LC_TIME=German_Switzerland.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] multcomp_1.4-1 TH.data_1.0-6 survival_2.38-2 mvtnorm_1.0-3 afex_0.14-2 lsmeans_2.19
[7] estimability_1.1 reshape2_1.4.1 lme4_1.1-8 Matrix_1.2-1 psych_1.5.4 stringi_0.5-5
[13] devtools_1.8.0
loaded via a namespace (and not attached):
[1] Rcpp_0.12.0 nloptr_1.0.4 git2r_0.10.1 plyr_1.8.3 tools_3.2.1 digest_0.6.8
[7] memoise_0.2.1 nlme_3.1-121 lattice_0.20-31 mgcv_1.8-6 rstudioapi_0.3.1 curl_0.9
[13] parallel_3.2.1 SparseM_1.6 coin_1.1-0 coda_0.17-1 stringr_1.0.0 xml2_0.1.1
[19] rversions_1.0.1 stats4_3.2.1 grid_3.2.1 nnet_7.3-10 minqa_1.2.4 car_2.0-26
[25] magrittr_1.5 modeltools_0.2-21 codetools_0.2-11 fortunes_1.5-2 MASS_7.3-41 splines_3.2.1
[31] pbkrtest_0.4-2 mnormt_1.5-3 quantreg_5.11 sandwich_2.3-3 zoo_1.7-12
