Main content

Date created: | Last Updated:


Creating DOI. Please wait...

Create DOI

Category: Project

Description: We developed a computer program, DNA Punctuation ( that searches and reports all possible stem-loop structures within the user-defined range of stem and loop sizes and the number of mismatches. With DNA Punctuation we annotated full genomes of 2030 bacteria and archaea, and the human genome with short and long stem-loop structures. We provide genome annotations in three versions: complete annotations with stem-loops and all possible variants, annotations without variants, and full genome sequences with regions covered by stem-loops being masked in low case. The web-site contains both command line and graphical version of the program, which can be used for the full-genome or genomic fragment annotations with the user-defined parameters.


Loading files...


Recent Activity

Loading logs...

OSF does not support the use of Internet Explorer. For optimal performance, please switch to another browser.
This website relies on cookies to help provide a better user experience. By clicking Accept or continuing to use the site, you agree. For more information, see our Privacy Policy and information on cookie use.

Start managing your projects on the OSF today.

Free and easy to use, the Open Science Framework supports the entire research lifecycle: planning, execution, reporting, archiving, and discovery.