This depository contains supporting information for the PhaeoNet WGCNA analysis of gene coexpression in *Phaeodactylum tricornutum*.
**Contents**
**Input papers**: pdfs of the RNAseq studies used for the construction of Phaeonet (Ouardia ait-Mohamed, 23rd July 2020).
**Cytoscape data**: Cytoscape tables represent, for each PhaeoNet merged module, both the edge and node data. The edge data represent a data frame with one row per edge. The node data is a data frame with one row per node. The tables can be downloaded into Cytoscape tool for each module visualisation (Ouardia ait-Mohamed, 12th October 2020).
**Expression data**: The expression data is a data frame. Each row represent the expression of a gene (in Phatr3 version) all through the total RNA-seq data used in PhaeoNet. The expression values are normalized for library sizes, variance through variance stabilizing transform and batch effect removal. (Ouardia ait-Mohamed, 12th October 2020)
**Module heatmaps**: Gene expression heatmaps for each unmerged PhaeoNet module, provided in pdf, svg and png format (Ouardia ait-Mohamed, 23rd July 2020)
**Manuscript figures**: Actualised main-text and supporting figures for the manuscript (Richard Dorrell, Nathalie Joli, Anna Novak Vanclova, 23rd July 2020)
**Supporting tables**: actualised supporting tables produced for the paper (Richard Dorrell, Nathalie Joli, Anna Novak Vanclova, Yue Liang, Xue Zhao, 23rd July 2020)
