# Project files description
See [Online Supplement.pdf](/29ydb/files/Online%20Supplement.pdf) for extended simulation results.
There is now an R package that implements the methods in this paper: https://jamesuanhoro.github.io/minorbsem/. See demonstration scripts below.
R scripts:
- Simulation studies:
1. [new_01_sim_resid.R](/29ydb/files/new_01_sim_resid.R): Simulation study 1 script
1. [new_02_sim_resid.R](/29ydb/files/new_02_sim_resid.R): Simulation study 2 script
1. [new_03_sim_resid.R](/29ydb/files/new_03_sim_resid.R): Simulation study 3 script
2. new_0X_sim_resid_loo.R: where X in {2, 3} are simulations 2 and 3 repeated with LOOCV as suggested by a reviewer
- Data demonstrations using minorbsem package:
1. [mb_setup.R](/29ydb/files/mb_setup.R): minorbsem setup script
2. [demo_hs_mb.R](/29ydb/files/demo_hs_mb.R): Holzinger-Swineford example
3. [demo_pd_mb.R](/29ydb/files/demo_pd_mb.R): Political Democracy example
4. [demo_norton_mb.R](/29ydb/files/demo_norton_mb.R): HADS example
1. [norton_mat.csv](/29ydb/files/norton_mat.csv): HADS covariance input
- Data demonstrations using CmdStan:
1. [demo_hs.R](/29ydb/files/demo_hs.R): Holzinger-Swineford example
2. [demo_pd.R](/29ydb/files/demo_pd.R): Political Democracy example
3. [demo_norton.R](/29ydb/files/demo_norton.R): HADS example
1. [norton_mat.csv](/29ydb/files/norton_mat.csv): HADS covariance input
- `AERA_23/test_paper.R`: Holzinger-Swineford example (AERA version)
Stan scripts:
- Main scripts:
1. [cfa.stan](/29ydb/files/cfa.stan): standard CFA, no Psi matrix.
1. [cfa_resid_lkj.stan](/29ydb/files/cfa_resid_lkj.stan): CFA, seprataion-strategy Psi
1. [cfa_resid_nrm.stan](/29ydb/files/cfa_resid_nrm.stan): CFA, normal hierarchical model for Psi
1. [sem.stan](/29ydb/files/sem.stan): standard SEM, no Psi matrix.
1. [sem_resid_nrm.stan](/29ydb/files/sem_resid_nrm.stan): Full SEM, normal model for residual covariances
- Simulation study 1 scripts (parallel-indicators):
1. [para_cfa.stan](/29ydb/files/para_cfa.stan): CFA no Psi matrix.
1. [para_cfa_az.stan](/29ydb/files/para_cfa_az.stan): CFA with approximate-zero Psi matrix.
1. [para_cfa_resid_lkj.stan](/29ydb/files/para_cfa_resid_lkj.stan): CFA seprataion-strategy Psi
1. [para_cfa_resid_nrm.stan](/29ydb/files/para_cfa_resid_nrm.stan): CFA normal hierarchical model for Psi
