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Supplement: Myotis daubentonii innate immunity by RNA-Seq
- Martin Hölzer
- Andreas Schoen
- Julia Wulle
- Marcel A. Müller
- Christian Drosten
- Manja Marz
- Friedemann Weber
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Category: Data
Description: Virus- and interferon alpha-induced transcriptomes of the “microbat” Myotis daubentonii (suborder Yangochiroptera). We stimulated M. daubentonii cells either with a strong IFN inducer virus or with type I IFN. Moreover, we measured global cellular transcription at two different time points and from three biological replicates using Illumina short-read RNA-Seq. Since no reference genome for M. daubentonii is publicly available so far, we used the genome of the closely related “microbat” M. lucifugus as a reference for RNA quantification, normalization, and differential expression analysis. Additionally, we de novo assembled the M. daubentonii transcriptomes using different assembly tools and a clustering approach.
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