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All data have been archived with the Western Sydney University Data Repository (doi:[10.4225/35/5a24cbf955391][1]). The scripts and data can be accessed at https://bitbucket.org/Coline_Dev/roottraits_amf. Raw DNA sequencing data are available under NCBI BioProject ID [PRJNA420909][2]. [1]: http://dx.doi.org/10.4225/35/5a24cbf955391 [2]: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA420909
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