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<h2><strong>Introduction</strong></h2> <p>This wiki accompanies the paper "Easing Into Open Science: A Tutorial for Graduate Students" (accepted for publication). The purpose of this tutorial is to provide a roadmap for how graduate students can begin to engage with open science practices. </p> <p>See below for a list of additional resources.</p> <hr> <p>Learn more about Open Science with an annotated reading list: <a href="https://doi.org/10.31234/osf.io/cfzyx" rel="nofollow">Cruwell and colleagues (2019)</a> or listening to <a href="https://medium.com/@mullarkey.mike/a-guide-to-open-science-for-people-who-are-already-too-busy-e42f6ac3a1c7" rel="nofollow">podcasts</a></p> <hr> <h2><strong>RESOURCES</strong></h2> <hr> <p><strong>Journal club</strong></p> <ol> <li> <p>ReproducibiliTea initiative: <a href="https://reproducibilitea.org/" rel="nofollow">https://reproducibilitea.org/</a></p> </li> <li> <p>Open Science reading list: <a href="https://osf.io/3qrj6/" rel="nofollow">https://osf.io/3qrj6/</a></p> </li> <li> <p>Open Science Community Starter Kit: <a href="https://docs.google.com/document/d/1bcodo-KtT93LRUZCNx-6r_1kZvDRMduh5o5ElKXf3PU/edit" rel="nofollow">https://docs.google.com/document/d/1bcodo-KtT93LRUZCNx-6r_1kZvDRMduh5o5ElKXf3PU/edit</a></p> </li> </ol> <hr> <p><strong>Project workflow</strong></p> <ol> <li>Video tutorial to create an OSF project: <a href="https://www.youtube.com/watch?v=dLEIhJESIQA" rel="nofollow">https://www.youtube.com/watch?v=dLEIhJESIQA</a></li> </ol> <hr> <p><strong>Preprints</strong> </p> <ol> <li> <p>Guide to submit to OSF preprints: <a href="https://help.osf.io/hc/en-us/articles/360019930533-Upload-a-Preprint" rel="nofollow">https://help.osf.io/hc/en-us/articles/360019930533-Upload-a-Preprint</a></p> </li> <li> <p>Ten simple rules for publishing a preprint: <a href="https://doi.org/10.1371/journal.pcbi.1005473" rel="nofollow">Bourne and colleagues (2017)</a></p> </li> <li> <p>Preprint introduction: </p> <p>a. <a href="https://help.osf.io/hc/en-us/articles/360021566914-Preprints" rel="nofollow">https://help.osf.io/hc/en-us/articles/360021566914-Preprints</a></p> <p>b. <a href="https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Preprints.pdf" rel="nofollow">https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Preprints.pdf</a></p> </li> <li> <p>Publisher copyright policies: <a href="http://www.sherpa.ac.uk/romeo/index.php" rel="nofollow">http://www.sherpa.ac.uk/romeo/index.php</a></p> </li> <li> <p>Licensing your work: <a href="http://blog.psyarxiv.com/2018/05/14/licensing-work-psyarxiv/" rel="nofollow">http://blog.psyarxiv.com/2018/05/14/licensing-work-psyarxiv/</a></p> </li> <li> <p>Managing preprints across the publication pipeline: <a href="https://getsyeducated.blogspot.com/2020/05/managing-preprints-across-publication.html" rel="nofollow">https://getsyeducated.blogspot.com/2020/05/managing-preprints-across-publication.html</a></p> </li> <li> <p>PsyArXiv FAQs: <a href="http://blog.psyarxiv.com/2016/09/19/psyarxiv-faq/" rel="nofollow">http://blog.psyarxiv.com/2016/09/19/psyarxiv-faq/</a></p> </li> </ol> <hr> <p><strong>Reproducible code</strong></p> <ol> <li> <p>Introduction to reproducible data analysis: <a href="https://open-science-training-handbook.gitbook.io/book/open-science-basics/reproducible-research-and-data-analysis" rel="nofollow">https://open-science-training-handbook.gitbook.io/book/open-science-basics/reproducible-research-and-data-analysis</a></p> </li> <li> <p>Using SPSS Syntax:</p> <p>a. <a href="https://libguides.library.kent.edu/SPSS/Syntax" rel="nofollow">https://libguides.library.kent.edu/SPSS/Syntax</a></p> <p>b. <a href="https://www.spss-tutorials.com/" rel="nofollow">https://www.spss-tutorials.com/</a></p> </li> <li> <p>JASP YouTube channel: <a href="https://www.youtube.com/channel/UCSulowI4mXFyBkw3bmp7pXg" rel="nofollow">https://www.youtube.com/channel/UCSulowI4mXFyBkw3bmp7pXg</a></p> </li> <li> <p>Introduction to R:</p> <p>a. <a href="https://learningstatisticswithr.com/" rel="nofollow">https://learningstatisticswithr.com/</a></p> <p>b. <a href="https://www.rensvandeschoot.com/tutorials/r-for-beginners/" rel="nofollow">https://www.rensvandeschoot.com/tutorials/r-for-beginners/</a></p> <p>c. Getting Started With R When You Know Absolutely Nothing: <a href="https://osf.io/9gq4a/" rel="nofollow">https://osf.io/9gq4a/</a></p> </li> <li> <p>Data Skills for Reproducible Science in R: <a href="https://psyteachr.github.io/msc-data-skills/" rel="nofollow">https://psyteachr.github.io/msc-data-skills/</a></p> </li> <li> <p>R cheatsheets: <a href="https://rstudio.com/resources/cheatsheets/#shiny" rel="nofollow">https://rstudio.com/resources/cheatsheets/#shiny</a></p> </li> <li> <p>APA formatted tables in R: <a href="https://cran.r-project.org/web/packages/apaTables/vignettes/apaTables.html" rel="nofollow">https://cran.r-project.org/web/packages/apaTables/vignettes/apaTables.html</a></p> </li> <li> <p>Data visualization in R: <a href="https://towardsdatascience.com/a-guide-to-data-visualisation-in-r-for-beginners-ef6d41a34174" rel="nofollow">https://towardsdatascience.com/a-guide-to-data-visualisation-in-r-for-beginners-ef6d41a34174</a></p> </li> </ol> <hr> <p><strong>Data sharing</strong></p> <ol> <li> <p>Guide to share data on the OSF: <a href="https://help.osf.io/hc/en-us/articles/360019931173-Sharing-data" rel="nofollow">https://help.osf.io/hc/en-us/articles/360019931173-Sharing-data</a></p> </li> <li> <p>Data sharing introduction: <a href="https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Data_Sharing.pdf" rel="nofollow">https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Data_Sharing.pdf</a></p> </li> <li> <p>Practical tips for ethical data sharing: <a href="http://ttps://doi.org/10.1177/2515245917747656" rel="nofollow">Meyer (2018)</a></p> </li> <li> <p>Practical tips for data sharing | OSF, mybinder, data dictionaries and more! <a href="https://www.youtube.com/watch?v=QBYVCbv5ZiQ" rel="nofollow">https://www.youtube.com/watch?v=QBYVCbv5ZiQ</a>&t=5s</p> </li> <li> <p>Finding other repositories/data archive plateforms: <a href="https://www.springernature.com/gp/authors/research-data-policy/repositories-socsci/12327116" rel="nofollow">https://www.springernature.com/gp/authors/research-data-policy/repositories-socsci/12327116</a></p> </li> <li> <p>Example consent forms for data sharing: <a href="https://www.ukdataservice.ac.uk/manage-data/legal-ethical/consent-data-sharing/consent-forms.aspx" rel="nofollow">https://www.ukdataservice.ac.uk/manage-data/legal-ethical/consent-data-sharing/consent-forms.aspx</a></p> </li> <li> <p>Different ways to share research: <a href="http://doi.org/10.1525/collabra.158" rel="nofollow">Klein and colleagues’ (2018)</a></p> </li> <li> <p>Open Research data and materials training: <a href="https://open-science-training-handbook.gitbook.io/book/open-science-basics/open-research-data-and-materials" rel="nofollow">https://open-science-training-handbook.gitbook.io/book/open-science-basics/open-research-data-and-materials</a></p> </li> <li> <p>Course in Reproducible Research Data & Project Management in R: <a href="https://annakrystalli.me/rrresearchACCE20/" rel="nofollow">https://annakrystalli.me/rrresearchACCE20/</a></p> </li> <li> <p>What is a codebook?: <a href="https://www.icpsr.umich.edu/icpsrweb/content/shared/ICPSR/faqs/what-is-a-codebook.html" rel="nofollow">https://www.icpsr.umich.edu/icpsrweb/content/shared/ICPSR/faqs/what-is-a-codebook.html</a>.</p> </li> <li> <p>Tutorial on how to use the codebook package: <a href="https://doi.org/10.1177/2515245919838783" rel="nofollow">Arslan (2019)</a></p> </li> <li> <p>Codebook in Excel: <a href="http://www.medicine.mcgill.ca/epidemiology/joseph/pbelisle/CodebookCookbook.html" rel="nofollow">http://www.medicine.mcgill.ca/epidemiology/joseph/pbelisle/CodebookCookbook.html</a></p> </li> </ol> <hr> <p><strong>Transparent writing</strong></p> <ol> <li>Tutorial on writing a transparent manuscript: <a href="https://doi.org/10.1177/2515245918754485" rel="nofollow">Gernsbacher (2018)</a></li> </ol> <hr> <p><strong>Preregistration</strong></p> <ol> <li> <p>Preregistration and Registered Report (more later) introduction: <a href="https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Preregistration.pdf" rel="nofollow">https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Preregistration.pdf</a></p> </li> <li> <p>Step by step guide: <a href="https://emmalhenderson.com/preregistration-osf/" rel="nofollow">https://emmalhenderson.com/preregistration-osf/</a></p> </li> <li> <p>Preregistration templates: <a href="https://osf.io/zab38/wiki/home/" rel="nofollow">https://osf.io/zab38/wiki/home/</a></p> </li> <li> <p>Video tutorial of how to register on the OSF: <a href="https://www.youtube.com/watch?v=rj89AgTdIvA" rel="nofollow">https://www.youtube.com/watch?v=rj89AgTdIvA</a></p> </li> <li> <p>Video lesson on preregistration: <a href="https://www.youtube.com/watch?v=EnKkGO3OM9c" rel="nofollow">https://www.youtube.com/watch?v=EnKkGO3OM9c</a></p> </li> </ol> <hr> <p><strong>Registered Reports</strong></p> <ol> <li> <p>List of journals accepting RRs:</p> <p>a. <a href="https://docs.google.com/spreadsheets/d/1D4_k-8C_UENTRtbPzXfhjEyu3BfLxdOsn9j-otrO870/edit#gid=0" rel="nofollow">https://docs.google.com/spreadsheets/d/1D4_k-8C_UENTRtbPzXfhjEyu3BfLxdOsn9j-otrO870/edit#gid=0</a></p> <p>b. <a href="https://cos.io/rr/" rel="nofollow">https://cos.io/rr/</a></p> </li> <li> <p>Webinars (<a href="https://cos.io/our-services/webinars/):" rel="nofollow">https://cos.io/our-services/webinars/):</a></p> <p>a. RR Q&A Part 1 (November 4th, 2019): <a href="https://www.youtube.com/watch?v=NjPJRxADP1U" rel="nofollow">https://www.youtube.com/watch?v=NjPJRxADP1U</a>&feature=<a href="http://youtu.be" rel="nofollow">youtu.be</a></p> <p>b. RR Q&A Part 2 (January 15th, 2020): <a href="https://www.youtube.com/watch?v=nlsD7tDQVNM" rel="nofollow">https://www.youtube.com/watch?v=nlsD7tDQVNM</a>&t=</p> <p>c. RR Q&A Part 3 (May 14th, 2020): To register (<a href="https://zoom.us/webinar/register/4315699374156/WN_ycbBbDgfSLmBdEL-NGdoMw" rel="nofollow">https://zoom.us/webinar/register/4315699374156/WN_ycbBbDgfSLmBdEL-NGdoMw</a>)</p> </li> <li> <p>How to write a RR: <a href="https://osf.io/my3wa" rel="nofollow">https://osf.io/my3wa</a> (<a href="https://docs.google.com/document/d/1eeXPEC_oc4OYlywC9pRt6seL2xazlT58jAtRsCuEdCI/edit" rel="nofollow">https://docs.google.com/document/d/1eeXPEC_oc4OYlywC9pRt6seL2xazlT58jAtRsCuEdCI/edit</a>)</p> </li> <li> <p>An example IPA Stage 1 RR for a dissertation: <a href="https://psyarxiv.com/dj5en/" rel="nofollow">https://psyarxiv.com/dj5en/</a> </p> </li> <li> <p>Checklist for RRs:</p> <p>a. <a href="https://osf.io/93znh/?_ga=2.106935041.321878455.1587660923-1962070641.1573052976" rel="nofollow">https://osf.io/93znh/?_ga=2.106935041.321878455.1587660923-1962070641.1573052976</a>&_gac=1.250151796.1587660923.CjwKCAjw-YT1BRAFEiwAd2WRtjPo0eiYOjMLEO3lF_wFw0sOapbh7Hu0Ksc1T-2RuvMTGjPe9c-oWRoCPccQAvD_BwE</p> <p>b. <a href="https://mfr.osf.io/render?url=https://osf.io/93znh/?_ga=2.106935041.321878455.1587660923-1962070641.1573052976&_gac=1.250151796.1587660923.CjwKCAjw-YT1BRAFEiwAd2WRtjPo0eiYOjMLEO3lF_wFw0sOapbh7Hu0Ksc1T-2RuvMTGjPe9c-oWRoCPccQAvD_BwE&direct&mode=render&action=download&mode=render" rel="nofollow">PDF Version</a> </p> </li> <li> <p>Step by step guide on submitting a RR: <a href="https://emmalhenderson.com/registered-reports/" rel="nofollow">https://emmalhenderson.com/registered-reports/</a></p> </li> </ol> <hr> <p><em>Please email Ummul Kathawalla at kath0033@umn.edu if you find issues with any of the links or would like to add an additional resource to the list.</em> </p>
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