**Introduction**
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This wiki accompanies the paper "Easing Into Open Science: A Tutorial for Graduate Students" (accepted for publication). The purpose of this tutorial is to provide a roadmap for how graduate students can begin to engage with open science practices.
See below for a list of additional resources.
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Learn more about Open Science with an annotated reading list: [Cruwell and colleagues (2019)][1] or listening to [podcasts][2]
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**RESOURCES**
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**Journal club**
1. ReproducibiliTea initiative: https://reproducibilitea.org/
2. Open Science reading list: https://osf.io/3qrj6/
3. Open Science Community Starter Kit: https://docs.google.com/document/d/1bcodo-KtT93LRUZCNx-6r_1kZvDRMduh5o5ElKXf3PU/edit
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**Project workflow**
1. Video tutorial to create an OSF project: https://www.youtube.com/watch?v=dLEIhJESIQA
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**Preprints**
1. Guide to submit to OSF preprints: https://help.osf.io/hc/en-us/articles/360019930533-Upload-a-Preprint
2. Ten simple rules for publishing a preprint: [Bourne and colleagues (2017)][3]
3. Preprint introduction:
a. https://help.osf.io/hc/en-us/articles/360021566914-Preprints
b. https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Preprints.pdf
4. Publisher copyright policies: http://www.sherpa.ac.uk/romeo/index.php
5. Licensing your work: http://blog.psyarxiv.com/2018/05/14/licensing-work-psyarxiv/
6. Managing preprints across the publication pipeline: https://getsyeducated.blogspot.com/2020/05/managing-preprints-across-publication.html
7. PsyArXiv FAQs: http://blog.psyarxiv.com/2016/09/19/psyarxiv-faq/
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**Reproducible code**
1. Introduction to reproducible data analysis: https://open-science-training-handbook.gitbook.io/book/open-science-basics/reproducible-research-and-data-analysis
2. Using SPSS Syntax:
a. https://libguides.library.kent.edu/SPSS/Syntax
b. https://www.spss-tutorials.com/
3. JASP YouTube channel: https://www.youtube.com/channel/UCSulowI4mXFyBkw3bmp7pXg
4. Introduction to R:
a. https://learningstatisticswithr.com/
b. https://www.rensvandeschoot.com/tutorials/r-for-beginners/
c. Getting Started With R When You Know Absolutely Nothing: https://osf.io/9gq4a/
5. Data Skills for Reproducible Science in R: https://psyteachr.github.io/msc-data-skills/
6. R cheatsheets: https://rstudio.com/resources/cheatsheets/#shiny
7. APA formatted tables in R: https://cran.r-project.org/web/packages/apaTables/vignettes/apaTables.html
8. Data visualization in R: https://towardsdatascience.com/a-guide-to-data-visualisation-in-r-for-beginners-ef6d41a34174
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**Data sharing**
1. Guide to share data on the OSF: https://help.osf.io/hc/en-us/articles/360019931173-Sharing-data
2. Data sharing introduction: https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Data_Sharing.pdf
3. Practical tips for ethical data sharing: [Meyer (2018)][4]
4. Practical tips for data sharing | OSF, mybinder, data dictionaries and more! https://www.youtube.com/watch?v=QBYVCbv5ZiQ&t=5s
5. Finding other repositories/data archive plateforms: https://www.springernature.com/gp/authors/research-data-policy/repositories-socsci/12327116
6. Example consent forms for data sharing: https://www.ukdataservice.ac.uk/manage-data/legal-ethical/consent-data-sharing/consent-forms.aspx
7. Different ways to share research: [Klein and colleagues’ (2018)][5]
9. Open Research data and materials training: https://open-science-training-handbook.gitbook.io/book/open-science-basics/open-research-data-and-materials
9. Course in Reproducible Research Data & Project Management in R: https://annakrystalli.me/rrresearchACCE20/
10. What is a codebook?: https://www.icpsr.umich.edu/icpsrweb/content/shared/ICPSR/faqs/what-is-a-codebook.html.
11. Tutorial on how to use the codebook package: [Arslan (2019)][6]
12. Codebook in Excel: http://www.medicine.mcgill.ca/epidemiology/joseph/pbelisle/CodebookCookbook.html
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**Transparent writing**
1. Tutorial on writing a transparent manuscript: [Gernsbacher (2018)][7]
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**Preregistration**
1. Preregistration and Registered Report (more later) introduction: https://www.bristol.ac.uk/media-library/sites/expsych/documents/ukrn/UKRN_Primer_Preregistration.pdf
2. Step by step guide: https://emmalhenderson.com/preregistration-osf/
3. Preregistration templates: https://osf.io/zab38/wiki/home/
4. Video tutorial of how to register on the OSF: https://www.youtube.com/watch?v=rj89AgTdIvA
5. Video lesson on preregistration: https://www.youtube.com/watch?v=EnKkGO3OM9c
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**Registered Reports**
1. List of journals accepting RRs:
a. https://docs.google.com/spreadsheets/d/1D4_k-8C_UENTRtbPzXfhjEyu3BfLxdOsn9j-otrO870/edit#gid=0
b. https://cos.io/rr/
2. Webinars (https://cos.io/our-services/webinars/):
a. RR Q&A Part 1 (November 4th, 2019): https://www.youtube.com/watch?v=NjPJRxADP1U&feature=youtu.be
b. RR Q&A Part 2 (January 15th, 2020): https://www.youtube.com/watch?v=nlsD7tDQVNM&t=
c. RR Q&A Part 3 (May 14th, 2020): To register (https://zoom.us/webinar/register/4315699374156/WN_ycbBbDgfSLmBdEL-NGdoMw)
3. How to write a RR: https://osf.io/my3wa (https://docs.google.com/document/d/1eeXPEC_oc4OYlywC9pRt6seL2xazlT58jAtRsCuEdCI/edit)
4. An example IPA Stage 1 RR for a dissertation: https://psyarxiv.com/dj5en/
5. Checklist for RRs:
a. https://osf.io/93znh/?_ga=2.106935041.321878455.1587660923-1962070641.1573052976&_gac=1.250151796.1587660923.CjwKCAjw-YT1BRAFEiwAd2WRtjPo0eiYOjMLEO3lF_wFw0sOapbh7Hu0Ksc1T-2RuvMTGjPe9c-oWRoCPccQAvD_BwE
b. [PDF Version][8]
6. Step by step guide on submitting a RR: https://emmalhenderson.com/registered-reports/
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*Please email Ummul Kathawalla at kath0033@umn.edu if you find issues with any of the links or would like to add an additional resource to the list.*
[1]: https://doi.org/10.31234/osf.io/cfzyx
[2]: https://medium.com/@mullarkey.mike/a-guide-to-open-science-for-people-who-are-already-too-busy-e42f6ac3a1c7
[3]: https://doi.org/10.1371/journal.pcbi.1005473
[4]: http://ttps://doi.org/10.1177/2515245917747656
[5]: http://doi.org/10.1525/collabra.158
[6]: https://doi.org/10.1177/2515245919838783
[7]: https://doi.org/10.1177/2515245918754485
[8]: https://mfr.osf.io/render?url=https://osf.io/93znh/?_ga=2.106935041.321878455.1587660923-1962070641.1573052976&_gac=1.250151796.1587660923.CjwKCAjw-YT1BRAFEiwAd2WRtjPo0eiYOjMLEO3lF_wFw0sOapbh7Hu0Ksc1T-2RuvMTGjPe9c-oWRoCPccQAvD_BwE&direct&mode=render&action=download&mode=render
