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**Installation** To install geneRFinder, please running the script follow: ``` Rscript ./src/config.R ``` <br /> **Usage** To run geneRFinder, ``` Rscript ./geneRFinder.R -i [fasta_file_name] -o [output_file_name] -t [thread_number] -s [start_type] -n [intergenic] ``` <br /> [fasta_file_name]: input file name <br /> [output_file_name]: output file name <br /> [thread_number]: number of thread <br /> [start_type]: <br /> 1 - if start codon is ATG <br /> 2 - if start codon is ATG, GTG and TTG <br /> <br /> [intergenic]: <br /> 1 - output without intergenic sequences <br /> 2 - output with intergenic sequences <br /> <br /> For example, ``` Rscript ./geneRFinder.R -i ./example/final.contigs.fa -o output -t 7 -s 1 -n 1 ```
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