**Installation**
To install geneRFinder, please running the script follow:
```
Rscript ./src/config.R
```
<br />
**Usage**
To run geneRFinder,
```
Rscript ./geneRFinder.R -i [fasta_file_name] -o [output_file_name] -t [thread_number] -s [start_type] -n [intergenic]
```
<br /> [fasta_file_name]: input file name
<br /> [output_file_name]: output file name
<br /> [thread_number]: number of thread
<br /> [start_type]: <br /> 1 - if start codon is ATG <br /> 2 - if start codon is ATG, GTG and TTG <br />
<br /> [intergenic]: <br /> 1 - output without intergenic sequences <br /> 2 - output with intergenic sequences <br /> <br />
For example,
```
Rscript ./geneRFinder.R -i ./example/final.contigs.fa -o output -t 7 -s 1 -n 1
```