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These data were obtained from https://portals.broadinstitute.org/cmap/ as .CEL files and then normalized using the SCAN algorithm (https://bioconductor.org/packages/release/bioc/html/SCAN.UPC.html) and mapped to Entrez Gene identifiers using BrainArray annotations (http://brainarray.mbni.med.umich.edu/www/data-analysis/custom-cdf/). They were then mapped to the Connectivity Map metadata, and the names of the files were altered accordingly.
This repository provides the code/scripts used to prepare the data as well as the normalized data.