Repository of visualization (or analytical) tools that process TiFoSi output or create input files. Tools are provided "as is": users must contact the developers directly to request modifications, upgrades, or to inform about code bugs.
**We encourage users and developers to contribute to populate this repository by submitting their developed tools (input/output/quantification). Any coding method is welcome!! To submit your tool contact jbuceta@gmail.com**
List of tools:
***OUTPUT***
- **TiFoSi_Movie_Maker_V1.0(.nb)**: a lightweight Wolfram Mathematica notebook that generates movies of the tissue dynamics (one movie per every protein defined in the code plus one movie showing the different cell types). *Developer*: J. Buceta (jbuceta@gmail.com)
- **makePlot(.py)**: a Python 3 script (included by default in TiFoSi, see README for usage and dependencies) able to generate images for each frame of a simulation (proteins and cell types) *Developer*: O. Canela (loriol@gmail.com)
***INPUT***
- **ANISE**: ANISE (gr**A**phical co**N**figurator of TiFoSi **I**n **S**ilico **E**xperiments) is a web-app that provides a graphical interface to easily create and edit the XML input configuration files of TiFoSi (including the visual design of gene regulatory interactions).
ANISE can be either downloaded [here][1] to install it locally (a link to the GitHub project can also be found on the Files section) or can be used in the following server: http://lsymserver.uv.es/lsym/ANISE
*Developers*: see GitHub
[1]: http://github.com/lsym-uveg/anise
