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<h1> SigProfilerExtractor </h1> <p>SigProfilerGenerator is a <a href="https://www.python.org/" rel="nofollow">python</a> framework that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of <a href="https://osf.io/s93d5/" rel="nofollow">SigProfilerMatrixGenerator</a> and <a href="https://osf.io/2aj6t/" rel="nofollow">SigProfilerPlotting</a>, seamlessly integrating with other <a href="https://osf.io/mc45g/" rel="nofollow">SigProfiler</a> tools.</p> <hr> <h3>Citation</h3> <p>In progress. <br></p> <h3>License</h3> <p>This software and its documentation are copyright 2018 as a part of the SigProfiler project. The SigProfilerExtractor framework is free software and is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. <br></p> <h3>Contact</h3> <p>All SigProfilerGenerator related queries or bug reports should be directed to S M Ashiqul Islam (Mishu) at m0islam@ucsd.edu.</p>
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