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Category: Data

Description: Genome-wide localization of chromatin and transcription regulators can be detected by a variety of techniques. In 2021, we describe a novel method ‘greenCUT&RUN’ for genome-wide profiling of transcription regulators, which has a very high sensitivity, resolution, accuracy and reproducibility, whilst assuring specificity . This technique produces robust genomic profiles, which are accurate and unbiased towards open chromatin. This pipeline is developed specifically for greenCUT&RUN technique, but it is applicable to CUT&RUN or CUT&Tag also. This repository contains the indexed reference genome and test datasets. greenPipe can be downloaded from https://github.com/snizam001/greenPipe