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<h2>Links & Resources</h2> <h3>Slides</h3> <ul> <li>Workshop slides: see the <code>Files</code> tab in this OSF repository for the PDF version of the slides</li> <li><a href="https://rfun.library.duke.edu/git/slides" rel="nofollow">Hands-on</a></li> </ul> <h2>Hands-on Prequisites & Exercises</h2> <ul> <li><a href="http://rfun.library.duke.edu/git/" rel="nofollow">Git/RStudio Hands-on Exercises</a> </li> </ul> <hr> <h2>Reproducibility</h2> <p>Karl Broman: <a href="http://kbroman.org/steps2rr/" rel="nofollow">Initial Steps Toward Reproducible Research</a> </p> <p>Cetinkaya-Rundel, M. (2016): <a href="https://osf.io/phyau/" rel="nofollow">Making your research reproducible with TIER + R + GitHub</a> [Slides]. </p> <p>Karl Broman: <a href="http://kbroman.org/Tools4RR/assets/lectures/07_clearcode.pdf" rel="nofollow">Writing Clear Code: Tools for Reproducible Research</a> [Slides]</p> <p>Data Carpentry: <a href="http://www.datacarpentry.org/rr-version-control/" rel="nofollow">Reproducible Research Version Control</a></p> <p>Kitzes, J., Turek, D., and Fatma Deniz. (Eds.). (2017) <em><a href="https://www.gitbook.com/book/bids/the-practice-of-reproducible-research/details" rel="nofollow">The Practice of Reproducible Research</a></em></p> <p>Gandrud, C. (2013). <em><a href="https://www.r-bloggers.com/getting-started-with-reproducible-research-a-chapter-from-my-new-book/" rel="nofollow">Getting Started with Reproducible Research</a></em></p> <p>Scientist & Engineers: Science 101: <a href="https://youtu.be/lvw4HBl8Lyo" rel="nofollow">The Basics of Reproducibility/Replicability</a> [Video with Brian Nosek]</p> <p>Stodden, V. et al. (2016). <em><a href="https://doi.org/10.1126/science.aah6168" rel="nofollow">Enhancing reproducibility for computational methods</a>.</em> Science 354 (6317)</p> <p>Richard Ball: <a href="https://osf.io/7g6cn/" rel="nofollow">TIER Protocol OSF 3.0 Midlife Crisis Demo</a>.</p> <hr> <h3>Git & RStudio</h3> <p>Duke's Co-Lab: <a href="https://extend.duke.edu/courses/course-v1:InnovationCoLab+998042043+2017/about" rel="nofollow">Introduction to Git</a></p> <p>Duke's <a href="https://gitlab.oit.duke.edu/" rel="nofollow">GitLab</a></p> <p>Jenny Bryan and the STAT 545 TAs: <a href="http://happygitwithr.com/" rel="nofollow">Happy Git and GitHub for the useR</a></p> <p><a href="https://try.github.io/levels/1/challenges/1" rel="nofollow">Got 15 Minutes</a> (Interactive tool to learn Git at the Command Line)</p> <p>Codecademy: <a href="https://www.codecademy.com/learn/learn-git" rel="nofollow">Learn Git</a></p>
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