Main content

Folding and Binding of DPO4

  0
Contributors:

Date created: | Last Updated:

: DOI | ARK

Creating DOI. Please wait...

Create DOI

Category: Project

Description: This repository includes: (1) necessary files for setting up and running Gromacs (version 4.5.7 with PLUMED version 2.5.0) simulations on DPO4 folding and DNA-binding with coarse-grained structure-based models. (2) programs and scripts for performing WHAM and reweigthing WHAM for DPO4 REMD folding (3) programs and scripts for performing DPO4 kinetic folding simulations (4) programs and scripts for performing WHAM for DPO4-DNA umbrella sampling binding (5) programs and scripts for performing frequency-adaptive metadynamics (rate calculation matlab script can be found at JCTC, 2014, 10, 1420-1425) Please let me know if you have any questions

Files | Discussion Wiki | Discussion | Discussion
default Loading...

Files

Citation

Tags

Recent Activity

OSF does not support the use of Internet Explorer. For optimal performance, please switch to another browser.
Accept
This website relies on cookies to help provide a better user experience. By clicking Accept or continuing to use the site, you agree. For more information, see our Privacy Policy and information on cookie use.
Accept
×

Start managing your projects on the OSF today.

Free and easy to use, the Open Science Framework supports the entire research lifecycle: planning, execution, reporting, archiving, and discovery.

Copyright © 2011-2024 Center for Open Science | Terms of Use | Privacy Policy | Status | API
TOP Guidelines | Reproducibility Project: Psychology | Reproducibility Project: Cancer Biology