Reproducible Publications at AGILE Conferences

doi:10.17605/OSF.IO/PHMCE

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Software sharing examples

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Software sharing examples

Live documents

Run code from GitHub in online notebook e.g. Binder

Repository structure

R: https://github.com/Reproducible-Science-Curriculum/rr-init

Research compendia

See https://research-compendium.science/.

Container with computational environment

Docker-based Geospatial toolkit for R: https://github.com/rocker-org/geospatial
OSGeo-related Docker images: https://wiki.osgeo.org/wiki/DockerImages
Examples of Research Compendium / Reproducibility Packages in Zenodo: https://zenodo.org/communities/research-compendium?page=1&size=20

Example papers from GIScience

Keßler, C., & Lotstein, E. (2018). Animation as a Visual Indicator of Positional Uncertainty in Geographic Information: https://github.com/crstn/UncertD3/ and http://doi.org/10.1007/978-3-319-78208-9_19
Mazurkiewicz, B., Kattenbeck, M., Kiefer, P., & Giannopoulos, I. (2020). Not Arbitrary, Systematic! Average-Based Route Selection for Navigation Experiments: https://doi.org/10.4230/LIPIcs.GIScience.2021.I.8

Software development in academia

https://www.hfstevance.com/blog/goodcode

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# Software sharing examples ## Live documents Run code from GitHub in online notebook e.g. Binder - Python: https://github.com/jorisvandenbossche/geopandas-tutorial - R: https://github.com/nuest/sensebox-binder (https://zenodo.org/record/1139929) ## Repository structure - R: https://github.com/Reproducible-Science-Curriculum/rr-init ## Research compendia See **https://research-compendium.science/**. ## Container with computational environment - Docker-based Geospatial toolkit for R: https://github.com/rocker-org/geospatial - OSGeo-related Docker images: https://wiki.osgeo.org/wiki/DockerImages - Examples of Research Compendium / Reproducibility Packages in Zenodo: https://zenodo.org/communities/research-compendium?page=1&size=20 ~~## Example papers from AGILE~~ ## Example papers from GIScience ~~- Keßler & Lotstein (2018): https://github.com/crstn/UncertD3/ and http://doi.org/10.1007/978-3-319-78208-9_19~~ - Keßler, C., & Lotstein, E. (2018). Animation as a Visual Indicator of Positional Uncertainty in Geographic Information: https://github.com/crstn/UncertD3/ and http://doi.org/10.1007/978-3-319-78208-9_19 - Mazurkiewicz, B., Kattenbeck, M., Kiefer, P., & Giannopoulos, I. (2020). Not Arbitrary, Systematic! Average-Based Route Selection for Navigation Experiments: https://doi.org/10.4230/LIPIcs.GIScience.2021.I.8 ## Software development in academia - https://www.hfstevance.com/blog/goodcode

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Software sharing examples

Live documents

Repository structure

Research compendia

Container with computational environment

Example papers from GIScience

Software development in academia

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Software sharing examples

Live documents

Repository structure

Research compendia

Container with computational environment

Example papers from GIScience

Software development in academia

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