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To reproduce the figures, download the individual zip packages in each directory (corresponding to individual experiments); upon unzipping, start the associated .RProject file and run the associated RNotebook (.Rmd). For any issues with running the analyses or accessing the files, please contact Ralitsa Madsen: rmadsen001@dundee.ac.uk Exact experimental details are provided as part of the associated manuscript: https://www.biorxiv.org/content/10.1101/2023.12.23.573207v2 Note that the final trusted antibody markers are those included in the "figure_output" directory for each dataset. - pAKT S473 - pS6 S240/S244 - pNDRG1 T346 - pERK1/2 T202/Y204; T185/Y187 - pSMAD2/3 S465/S467; S423/S425 - pRB S807/S811 - cCASP3 D175 - S6 total - AKT total Any other antibodies included in the raw data are not relevant to the publication but were part of ongoing antibody panel optimisations/titrations - they should not be used as they are still undergoing validation.
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