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Sequence variation in PCR primers/probe binding regions of coronavirus SARS-CoV-2 genome

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Description: The objective of this project is to perform in silico inclusivity evaluation of COVID-19 polymerase chain reaction (PCR) diagnostic assays using freely available software programs. The pipeline can be applied to any assay of choice using the protocol and the sequence file provided.

License: CC-By Attribution 4.0 International

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Type: COVID-19
Status: Active

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Multiple sequence alignment (MSA) of SARS-CoV-2 genome

Khan
MSA files of SARS-CoV-2 sequences downloaded from NCBI virus.
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