Analysis of Promoter Capture Hi-C data for GM12878 and mouse ES cells using the CHiCAGO pipeline

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Description: Datasets associated with the paper presenting the CHiCAGO pipeline (Cairns*/Freire-Pritchett* et al., Genome Biol 2016)

License: CC-By Attribution 4.0 International


This repository contains CHiCAGO input, design and output files, as well as chromatin feature files for the Promoter Capture Hi-C experiments in GM12878 (Mifsud et al, 2015) and mESC (Schoenfelder et al., 2015) cells that were used in the study presenting the CHiCAGO pipieline (Cairns / Freire-Pritchett et al., 2016). CHiCAGO input files GM12878_chinput.tar.gz (three biological replicates from M...


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