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<p>The Mindboggle-101 surface and volume brain atlases were generated as part of the Mindboggle project (<a href="http://mindboggle.info" rel="nofollow">http://mindboggle.info</a>, <a href="https://osf.io/ydyxu/" rel="nofollow">OSF</a>) and are licensed under a <a href="http://creativecommons.org/licenses/by-nc-nd/3.0/deed.en_US" rel="nofollow">Creative Commons License</a>. The anatomical labels are combined across individually labeled brain volumes or surfaces from Mindboggle-101 according to the Desikan-Killiany-Tourville (DKT) labeling protocol:</p> <p>"101 labeled brain images and a consistent human cortical labeling protocol" <br> Arno Klein, Jason Tourville. Frontiers in Brain Imaging Methods. 6:171. <br> DOI: <a href="http://dx.doi.org/10.3389/fnins.2012.00171" rel="nofollow">10.3389/fnins.2012.00171</a> </p> <p><strong>Volume atlas construction</strong> <br> The joint fusion algorithm (Hongzhi Wang, 2013; distributed with ANTs) was used to construct probabilistic labels of the 20 OASIS-TRT brains, including a single volume of probabilities corresponding to the winning labels. Joint fusion was performed on the 20 brains after antsRegistration warped them to the OASIS-30 Atropos template. Results are also given after affine transformation to the OASIS-30 Atropos template in MNI152 space, and after resampling to 2mm^3 resolution. </p> <p><strong>Code and documentation</strong> - CHANGELOG.txt: log of changes - make_jointfusion_atlas.txt: code to make a joint fusion atlas - resample2mm.txt: code to resample a volume to 2mm^3 resolution - make_freesurfer_classifier_atlas.txt: software to make a FreeSurfer classifier atlas</p> <p><strong>Joint fusion volume atlases</strong> (2013) - OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_OASIS-30_v2.nii.gz - OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_MNI152_v2.nii.gz - OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_MNI152_2mm_v2.nii.gz</p> <p><strong>Joint fusion label probabilities</strong> (2013) - OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_OASIS-30_v2.nii.gz - OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_MNI152_v2.nii.gz - OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_MNI152_2mm_v2.nii.gz</p> <p><strong>Cortical surface atlases</strong> (FreeSurfer classifier left/right .gcs files) - [lh,rh].DKT31atlas101subjects.gcs: from all 101 participants (2016) - [lh,rh].DKTatlas40.gcs: from 40 participants (2012)</p>
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