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Nile rat genome paper supplementary materials
- Huishi Toh
- Chentao Yang
- Giulio Formenti
- Kalpana Raja
- Lily Yan
- Alan Tracey
- William Chow
- Kerstin Howe
- Lucie A. Bergeron
- Guojie Zhang
- Bettina Haase
- Jacquelyn Mountcastle
- Olivier Fedrigo
- John Fogg
- Bogdan Kirilenko
- Chetan Munegowda
- Michael Hiller
- Aashish Jain
- Daisuke Kihara
- Arang Rhie
- Adam M. Phillippy
- Scott Allen Swanson
- Peng Jiang
- Dennis O. Clegg
- Erich D. Jarvis
- James A. Thomson
- Ron Stewart
- Mark Chaisson
- Yury V Bukhman
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Description: Nile rat genome paper supplementary materials
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Citation
Components
Heterozygosity spectrum
Chentao Yang's heterozygosity spectrum analysis
PAML branch-site analysis
Chentao Yang's PAML branch-site analysis
Assembly quality
Nile rat assembly quality metrics compared to other representative genomes of the Murinae
Diversification selection
Chentao Yang's dN/dS analysis of Nile rat vs. house mouse, Norway rat, and human
Text mining
Use text mining to find genes linked to type 2 diabetes in humans and diet-induced diabetes in animal models
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