Google Cloud Pilot RNA-Sequencing for CCLE and TCGA

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Description: We processed over 10,000 RNA-Seqeuencing samples from the Cancer Cell Line Encyclopedia and The Cancer Genome Atlas using kallisto

License: CC-By Attribution 4.0 International

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Directories containers The files required to create the two docker containers we used with the Google Genomics API are located here. If you prefer to just pull the images from DockerHub, use the links below. TCGA Image (input tar or tar.gz with .fastq or fastq.gz files inside): available here CCLE Image (input BAM file): available here data Any data required as input to the scripts are l...

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