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Google Cloud Pilot RNA-Sequencing for CCLE and TCGA

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Description: We processed over 10,000 RNA-Seqeuencing samples from the Cancer Cell Line Encyclopedia and The Cancer Genome Atlas using kallisto

License: CC-By Attribution 4.0 International

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  • containers

    • The files required to create the two docker containers we used with the Google Genomics API are located here.
    • If you prefer to just pull the images from DockerHub, use the links below.
      • TCGA Image (input tar or tar.gz with .fastq or fastq.gz files inside): available here
      • CCLE Image (input BAM file): available here

  • data

    • Any data required as input to the scripts are l…

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bioinformaticscancercloud computinggenomicsinformaticsRNA-Sequencing

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