Contains all analysis scripts and results for Experiment 3.
The main analysis file that produces the results report `experiment3_analysis.html` is `experiment3_analysis.Rmd` (an R markdown file). It requires the prepared data file `dat_prepared.rda`, several fitted model files (see below), as well as the helper function `helper_functions.R`. This file can also produce the results figures (as `pdf`s).
`experiment_3-models.R` is the main analysis file fitting all reported GLMMs and LMMs. It produces the following model files: `e3_neither_models.rda`, `true_model_selection_between_exp3.rda`, `true_model_selection_within_exp3.rda`, and `exp3_true_separate1.rda`.
The code ran in the following `R` session:
> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.5 LTS
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=en_GB.UTF-8
[4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=de_CH.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=de_CH.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=de_CH.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] latticeExtra_0.6-28 RColorBrewer_1.1-2 effects_3.1-2 lattice_0.20-35 tidyr_0.6.1
[6] dplyr_0.5.0 multcomp_1.4-6 TH.data_1.0-8 MASS_7.3-45 survival_2.41-3
[11] mvtnorm_1.0-6 reshape2_1.4.2 afex_0.17-8 lsmeans_2.25-5 estimability_1.2
[16] lme4_1.1-12 Matrix_1.2-8 knitr_1.15.1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.10 zoo_1.7-14 assertthat_0.1 digest_0.6.12 R6_2.2.0
[6] plyr_1.8.4 backports_1.0.5 acepack_1.4.1 MatrixModels_0.4-1 stats4_3.3.3
[11] coda_0.19-1 highr_0.6 ggplot2_2.2.1 lazyeval_0.2.0 minqa_1.2.4
[16] data.table_1.10.4 SparseM_1.76 car_2.1-4 nloptr_1.0.4 rpart_4.1-10
[21] checkmate_1.8.2 splines_3.3.3 stringr_1.2.0 foreign_0.8-67 htmlwidgets_0.8
[26] munsell_0.4.3 base64enc_0.1-3 lmerTest_2.0-33 mgcv_1.8-17 htmltools_0.3.5
[31] nnet_7.3-12 tibble_1.3.0 gridExtra_2.2.1 htmlTable_1.9 coin_1.1-3
[36] Hmisc_4.0-2 codetools_0.2-15 grid_3.3.3 nlme_3.1-131 xtable_1.8-2
[41] gtable_0.2.0 DBI_0.6-1 magrittr_1.5 scales_0.4.1 stringi_1.1.5
[46] sandwich_2.3-4 Formula_1.2-1 tools_3.3.3 parallel_3.3.3 pbkrtest_0.4-7
[51] colorspace_1.3-2 cluster_2.0.6 quantreg_5.29 modeltools_0.2-21
