Full samples as individuals CHiCAGO Rds

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Please note that for some functions the Rds files need to be edited to show the full paths to the Design files: *rmapfile*, *baitmapfile*, *nperbinfile*, *nbaitsperbinfile* and *proxOEfile*. The rmap and baitmap used to generate the full set of Design files are available in this OSF repository (see Design files: HindIII GWAS all HaCaT/MyLa baits). For example, in R: cd_hacat@settings$rmapfile <- "user/chicago/designDir/GRCh37_HindII.rmap" For these CHiCAGO Rds files, each replicate was processed in a separate CHiCAGO analysis. CHiCAGO was run using all baits within the full baitmap for each respective cell line (HaCaT and MyLa).

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