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<h2>USC colon data</h2> <hr> <h3>Data description</h3> <h4><strong>uscdata_side_AB.txt</strong></h4> <p>contains a total of 32 mutational catalogs from 16 colon tumors, each of which provides two sets of mutations from each side of the tumor. </p> <h4><strong>uscdata_trunk_branch.txt</strong></h4> <p>contains a total of 32 mutational catalogs from 16 colon tumors, each of which provides a set of trunk mutations and a set of branch mutations.</p> <p>Please refer to this supplemental file for the number of mutations in each mutational catalog. <a href="https://www.biorxiv.org/content/10.1101/577452v1.supplementary-material" rel="nofollow">https://www.biorxiv.org/content/10.1101/577452v1.supplementary-material</a></p> <hr> <h3>Mutation Position Format</h3> <p>sample1 chr1 100 A C</p> <p>sample1 chr1 200 A T</p> <p>sample1 chr2 100 G T</p> <p>sample2 chr1 300 T C</p> <p>sample3 chr3 400 T C</p> <p>The 1st column shows the name of samples</p> <p>The 2nd column shows the name of chromosome</p> <p>The 3rd column shows the coordinate in the chromosome</p> <p>The 4th column shows the reference base (A, C, G, or T)</p> <p>The 5th colum shows the alternate base (A, C, G, or T)</p> <hr> <h3>Citation</h3> <p><strong>Zhi Yang</strong>, Priyatama Pandey, Darryl Shibata, David V. Conti, Paul Marjoram, Kimberly D. Siegmund. HiLDA: a statistical approach to investigate differences in mutational signatures, bioRxiv, doi: <a href="https://doi.org/10.1101/577452" rel="nofollow">https://doi.org/10.1101/577452</a></p>
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