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**We are hiring! Check these websites for jobs in Berlin and Oxford:** https://www.bihealth.org/en/research/quest-center/news/calls/ https://www.anthro.ox.ac.uk/article/reproducible-research-oxford-coordinator **Preparations for Berlin Oxford summer school** 1. Create an account on Open Science Framework if you don’t have one yet: https://osf.io/ 2. For the ECR discussion on Friday, add any questions you might have to this google doc: https://docs.google.com/document/d/13bKFCDbcccwpo1QTZfR_Lixu7UTwwBjGhtxSpHiZZvo/edit 3. Check whether there are any further instructions for the specific workshops you will attend (see below) ## Workshops @[toc](Overview) ### Workshop 3, 4: Simulating experimental data *Preparations* Please check the file with more detailed installation requirements on the OSF website for the workshop: https://osf.io/9t3fb/. In brief: 1. Have Microsoft Excel installed on your laptop (free versions such as LibreOffice Calc might also work but our resources were created using Excel) 2. Install R and RStudio and some additional scripts (more details in the installation requirements file). ### Workshop 16: Reproducible Workflows ### Please bring a laptop with your favourite analysis software installed (either R+RStudio or Anaconda+Python3). Please also install [Git][1] and get a free [Github][2] account ### Workshop 20: Jupyter notebooks and Python visualisation ### Participation should be possible with a web browser alone, but participants should consider downloading the Anaconda distribution. Either the full version (https://www.anaconda.com/download/ or a smaller ‘MiniConda’ option are free and available for most operating systems (https://docs.conda.io/en/latest/miniconda.html). One of these options is required if you want to follow along with using ‘Conda’ or keep your copies of notebooks. ## Installation instructions ## ### Installing R * Open an internet browser and go to www.r-project.org * Click the "download R" link in the middle of the page under "Getting Started." * Click on the link for a CRAN location close to you * Mac users: * Click on the "Download R for (Mac) OS X" link at the top of the page. * Click on the file containing the latest version of R under "Files." * Save the .pkg file, double-click it to open, and follow the installation instructions. * Windows users: * Click on the "Download R for Windows" link at the top of the page. * Click on the "install R for the first time" link at the top of the page. * Click "Download R for Windows" and save the executable file somewhere on your computer. * Run the .exe file and follow the installation instructions. ### Installing R studio R studio is a friendly interface for R. Once it is installed, you need not open the original R software: instead, you access R by opening the R studio application * Go to www.rstudio.com and click on the "Download RStudio" button. * Click on "Download RStudio Desktop." Mac users: * Click on the version recommended for your system, or the latest Mac version, save the .dmg file on your computer, double-click it to open, and then drag and drop it to your applications folder. Windows users: * Click on the version recommended for your system, or the latest Windows version, and save the executable file. Run the .exe file and follow the installation instructions. [1]: https://git-scm.com/downloads [2]: https://github.com/
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